Yearly Archives: 2020

Next generation proteomics of international collaborative network published in Nature Communications

  • October 29, 2020
  • Comments off

Sander Piersma and Connie Jimenez of the OncoProteomics Laboratory participated in international benchmark study. Using harmonized mass spectrometry (MS) instrument platforms and standardized data acquisition procedures, we demonstrate robust, sensitive, and reproducible data generation across eleven international sites on seven consecutive days in a 24/7 operation mode.   This work paves the way for large clinical proteomics across multiple sites […]

Read More

INKA analysis in the news

  • October 26, 2020
  • Comments off

Two collaborative papers with the Griffioen and Nowak-Sliwinska labs published that combine functional testing with phosphoproteomics and INKA analysis for selecting optimized drug combinations highlight on swiss television !   Optimized low-dose combinatorial drug treatment boosts selectivity and efficacy of colorectal carcinoma treatment. Zoetemelk M, Ramzy GM, Rausch M, Koessler T, van Beijnum JR, Weiss A, […]

Read More

Dutch-Chinese collaborative study published!

  • August 18, 2020
  • Comments off

We report a comprehensive DIA pan-human library consisting of 1096 data-dependent acquisition MS raw files for 16 types of cancer samples. Genomics Proteomics Bioinformatics 2020 Aug 12;S1672-0229(20)30093-0. doi: 10.1016/j.gpb.2019.11.008. DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery Tiansheng Zhu 1, Yi Zhu 2, Yue Xuan 3, Huanhuan Gao 4, Xue Cai […]

Read More

Website launched for the The Cancer Proteome Atlas (TCPA) Project based on Mass Spectrometry

  • May 28, 2020
  • Comments off

Website launched for the The Cancer Proteome Atlas (TCPA) Project based on Mass Spectrometry MS-based TCPA a grass-roots initiative started by Connie Jimenez (Amsterdam UMC, The Netherlands and co-chair of the HUPO Cancer Project), who teamed up with Tiannan Guo (Westlake University, China) during the HUPO2017 meeting in Dublin. MS-based TCPA is currently a joined […]

Read More