2024 Schedule Optional Master “Biomedical Proteomics" ; M_CPROTBI09
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| Theme 1 Proteomics, Mass Spectrometry and Biomedical Applications |
Coordinator: CR Jiménez |
| Week/day/date |
duration |
Staff |
Form |
Subject |
Room |
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Please note that breaks will be made flexibly as needed |
| 1 |
Mon |
29-Jan |
9.30-10.30 |
CRJ |
L |
Introduction to Proteomics |
CCA 1.06 |
| 1 |
Mon |
29-Jan |
10.30-11.30 |
CRJ |
L |
Proteomics to obtain biological insight, part 1 |
CCA 1.06 |
| 1 |
Mon |
29-Jan |
11.30-12.30 |
CRJ |
L |
Proteomics to obtain biological insight, part 2 |
CCA 1.06 |
| 1 |
Mon |
29-Jan |
12.30-17.00 |
n/a |
Zelfstudie |
Literature reading |
n/a |
| 1 |
Tue |
30-Jan |
9.30-10.00 |
CRJ |
Q&A |
Short discussion learning goals and self-study Monday |
CCA 1.34 |
| 1 |
Tue |
30-Jan |
10.00-11.00 |
CRJ |
L |
Mass spectrometry in Proteomics, part 1 |
CCA 1.34 |
| 1 |
Tue |
30-Jan |
11.00-12.00 |
CRJ |
L |
Mass spectrometry in Proteomics, part 2 |
CCA 1.34 |
| 1 |
Tue |
30-Jan |
12.00-12.30 |
TVP |
L/ Demo |
Protein identification by Database searching |
CCA 1.34 |
| 1 |
Tue |
30-Jan |
12.30-17.00 |
n/a |
Zelfstudie |
Literature reading |
n/a |
| 1 |
Wedn |
31-Jan |
9.30-10.00 |
CRJ |
Q&A |
Short discussion learning goals and self-study Tuesday |
CCA 1.34 |
| 1 |
Wedn |
31-Jan |
10.00-11.00 |
CRJ |
L |
Quantitative proteomics |
CCA 1.34 |
| 1 |
Wedn |
31-Jan |
11.00-12.00 |
CRJ |
L |
Biomarker Discovery |
CCA 1.34 |
| 1 |
Wedn |
31-Jan |
12.30-17.00 |
n/a |
Zelfstudie |
Literature reading |
n/a |
| 1 |
Thu |
1-Feb |
9.30-10.00 |
CRJ |
Q&A |
Short discussion learning goals and self-study Wednessday |
CCA 1.06 |
| 1 |
Thu |
1-Feb |
10.00-11.00 |
CRJ |
L |
Proteomics to study cellular signaling: Analysis of protein complexes |
CCA 1.06 |
| 1 |
Thu |
1-Feb |
11.00-12.00 |
CRJ |
L |
Proteomics to study cellular signaling: Phosphoproteomics |
CCA 1.06 |
| 1 |
Thu |
1-Feb |
12.00-13.00 |
DK |
L |
Proteomics in cardiovascular disease |
CCA 1.34 |
| 1 |
Fri |
2-Feb |
9.30-10.00 |
CRJ |
Q&A |
Short discussion learning goals and self-study Thursday |
CCA 1.34 |
| 1 |
Fri |
2-Feb |
10:00-10:30 |
CRJ |
L |
Protocol gelelectrophoresis & protein staining |
CCA 1.34 |
| 1 |
Fri |
2-Feb |
10:30-17:00 |
RH/MNM |
PR |
Practicum gelelectrophoresis & protein staining f |
CCA 1.59 |
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| 2024 Scedule Optional Master “Biomedical Proteomics" ; M_CPROTBI09 |
| Theme 2 Proteomics in Practice |
Coordinator: CR Jiménez |
| Global quantitative proteomics |
| Week/day/date |
duration |
Staff |
Form |
Subject |
Room |
| 2 |
Mon |
5-Feb |
9.30-17.00 |
RdH, OPL |
PR |
In-gel digestion of proteins |
CCA 1.59 lab |
| 2 |
Tue |
6-Feb |
9.00-13.00 |
RdH |
PR |
Peptide extraction and sample preparation for mass spectrometry |
CCA 1.59 lab |
| 2 |
Tue |
6-Feb |
13.00-14.00 |
CRJ |
Tour of MS Lab |
LC-MS of peptide samples |
CCA mass spec lab |
| 2 |
Tue |
6-Feb |
14.00-15.00 |
TVP |
L |
Data processing and data mining |
CCA 1.06 |
| 2 |
Tue |
6-Feb |
15.00-17.00 |
n/a |
Zelfstudie |
Literature reading, preparation presentation |
n/a |
| 2 |
Wed |
7-Feb |
9.00-12.30 |
n/a |
Zelfstudie |
Literature reading, preparation presentation |
n/a |
| 2 |
Wed |
7-Feb |
13.30-17.00 |
CRJ |
PR |
Literature study: presentation |
CCA 1.34 |
| 2 |
Thu |
8-Feb |
9.30-11.00 |
FB |
L |
Data mining using GO and pathway tools |
CCA 1.06 |
| 2 |
Thu |
8-Feb |
11.00-14.30 |
FB, CRJ |
PR |
Data mining |
CCA 1.34 |
| 2 |
Thu |
8-Feb |
14.30-15.00 |
CRJ |
Q&A |
Discussion of last questions that may arise prior to the exam |
CCA 1.34 |
| 2 |
Thu |
8-Feb |
15.00-17.00 |
n/a |
Zelfstudie |
Literature reading, preparation exam |
n/a |
| 2 |
Fri |
9-Feb |
9.00-14.00 |
n/a |
Zelfstudie |
Preparation exam |
n/a |
| 2 |
Fri |
9-Feb |
14.30-16.30 |
CRJ |
EXAM |
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CCA 1.34 |
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| L=lecture (hoorcollege); PR= practical lab work |
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| staff: |
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| CRJ= |
Connie Jiménez |
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| TVP= |
Thang Pham |
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| RdH= |
Richard de Haas |
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| DK= |
Diederik Kuster |
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| FB= |
Franziska Bottger |
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| MNM= |
Madalena Nunes Monteiro |
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| Proteomics= 3 credits cursus |
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